A command-line interface tool to extract, filter, and standardise mass spectrometry data.

Installation

Prerequisites: Node.js® and Docker®

sudo npm install -g exfilms

Usage

exfilms -h

For more information, please refer to our user guide here.

License

Please refer to our license information here.

Citation

If you use this software in your work, please cite it using the following metadata:

Nambiar, V., Schiemer, T., Nambiar, S., Whiley, L., Wong, K. W., Wang, G., Holmes, E., & Wist, J. (2025). ExfilMS (Version 2.0.1) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.10976761

2.0.1 (2025-03-17)

Bug Fixes

• semantic release automation (cb4173c)

2.0.0 (2025-03-13)

Bug Fixes

• eslint: update config file (fd50fd2)

Features

• exfilms: major update (1cadc27)

BREAKING CHANGES

• exfilms: (1) Removal of TSV as output format, (2) Refined spectrum array target filtering, and (3) New JSON output structure

1.3.1 (2024-10-22)

Bug Fixes

• package: update package URL paths and dependencies (9ba3249)

1.3.0 (2024-06-05)

Features

• parsetargetfile: add preliminary target file check (93aa3a3)

1.2.8 (2024-04-18)

Bug Fixes

• package.json: resolve repository url error (110ebef)

1.2.7 (2024-04-18)

Bug Fixes

• npm: update npm package version (a3a46bb)

1.2.6 (2024-04-18)

Bug Fixes

• decoder: resolve issue #7 (6e9dce0)

1.2.5 (2024-04-16)

Bug Fixes

• readme: minor documentation changes (b4f6db0)

1.2.4 (2024-04-16)

Bug Fixes

• citation: version update (f99d790)

1.2.3 (2024-04-16)

Bug Fixes

• add citation file and zenodo release (ec99294)

1.2.2 (2024-04-12)

Bug Fixes

• precision rounding: issue #6 (b37fae5)

1.2.1 (2024-04-04)

Bug Fixes

• vitest: patch vite security issue (c377a11), closes #5

1.2.0 (2024-04-04)

Features

• spectrum extraction: extract inverse reduced ion mobility value (98cbc55), closes #4

1.1.1 (2024-04-03)

Bug Fixes

• update MS data properties (833a76b)

1.1.0 (2024-03-28)

Features

• chromatogram extraction: fix and update isolation window target extraction (1439919), closes #3

1.0.3 (2024-03-28)

Bug Fixes

• input check: set input defaults appropriately (67e112a)

1.0.2 (2024-03-27)

Bug Fixes

• interactive: writing to output file (9735138), closes #2

1.0.1 (2024-03-27)

Bug Fixes

• missing badge logo (aabb99b)

1.0.0 (2024-03-21)

Bug Fixes

• .tmp file path (67ef706)
• eslint config (d57ee15)
• JSON parse string value (f28ef76)
• removed unused dependencies (b222ae0)
• rounding of min and maxMZ from targetFile (4e345bb)
• testDirectory path issue (a708106)

Features

• added config for vitest UI (5e9b656)
• changed function name (4506988)
• enable Docker build (fdee34c)